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Differences in sex development (DSD) are a diverse group of conditions where the chromosomal, gonadal or anatomical sex can be atypical.

How to order genomic testing for differences in sex development (DSD)

This page provides information for healthcare professionals on how to request non-NHS genomic testing for differences in sex development (DSD) . For NHS tests, please visit the relevant pages here. 

Step by step instructions

About differences in sex development (DSD)

Differences in sex development (DSD) are a diverse group of conditions where the chromosomal, gonadal or anatomical sex can be atypical. DSDs are caused either by disruption of sex differentiation due to defects in hormone production/sensitivity, or by alterations in the pathway responsible for determining gonadal development.

Test code and gene information

NHSE test directory code: R146 Differences in sex development.

The DSD panel contains genes involved in gonadal development and gonadal differentiation (PanelApp v2.1, January 2020)

 

Disorders of gonadal development
Gene Associated phenotypes OMIM
ARX Proud syndrome (Corpus Callosum, Agenesis Of, With Abnormal Genitalia)

X-linked Lissencephaly type 2

300004

300215

ATRX X-linked Alpha-thalassemia/mental retardation syndrome 301040
CUL4B X-linked intellectual disability, Cabezas type 300354
DHH 46,XY complete gonadal dysgenesis (46,XY sex reversal type 7)

46,XY gonadal dysgenesis-motor and sensory neuropathy syndrome

233420

607080

MAMLD1 X-linked Hypospadias type 2

X-linked myotubular myopathy-abnormal genitalia syndrome

300758

300219

MAP3K1 46,XY complete gonadal dysgenesis (46,XY sex reversal type 6) 46,XY partial gonadal dysgenesis 613762
NR0B1 46,XY sex reversal type 2

Congenital Adrenal Hypoplasia

300018

300200

NR5A1 46,XX sex reversal type 4

46,XY sex reversal type 3

Adrenocortical insufficiency/Premature Ovarian Failure type 7

Spermatogenic failure type 8

617480

612965

612964

613957

RPL10 Syndromic X-linked intellectual disability 300998
RSPO1 Palmoplantar hyperkeratosis with squamous cell carcinoma of skin and sex reversal 610644
SOX9 Campomelic dysplasia 114290
SOX10 Peripheral demyelinating neuropathy, Central dysmyelination, Waardenburg syndrome, and Hirschsprung disease (PCWH)

Waardenburg syndrome, type 4C

609136

 

613266

SRY 46,XX sex reversal type 1

46,XY sex reversal type 1

400045 400044
TOE1 Pontocerebellar hypoplasia, type 7 614969
WT1 Denys-Drash syndrome

Frasier syndrome

194080

136680

Disorders of gonadal differentiation
Gene Associated phenotypes OMIM
AMH Persistent Mullerian duct syndrome type 1 261550
AMHR2 Persistent Mullerian duct syndrome type 2 261550
AR Androgen insensitivity

X-linked Hypospadias type 1

300068

300633

CDKN1C IMAGE syndrome 614732
CHD7 CHARGE syndrome

Hypogonadotropic hypogonadism type 5

214800

612370

CYB5A Methemoglobinemia and ambiguous genitalia 250790
CYP11A1 Congenital adrenal insufficiency with 46,XY sex reversal 613743
CYP11B1 Adrenal hyperplasia, congenital, due to 11-beta-hydroxylase deficiency

Glucocorticoid-remediable aldosteronism

202010

103900

CYP17A1 46,XY disorder of sex development due to isolated 17,20-lyase deficiency 202110
CYP19A1 Aromatase excess syndrome 139300
CYP21A2* Congenital adrenal hyperplasia due to 21-hydroxylase deficiency 201910
DHCR7 Smith-Lemli-Opitz syndrome 270400
HSD17B3 46,XY disorder of sex development due to 17-beta-hydroxysteroid dehydrogenase 3 deficiency 264300
HSD3B2 Congenital adrenal hyperplasia due to 3-beta-hydroxysteroid dehydrogenase 2 deficiency 201810
LHCGR Leydig cell hypoplasia due to complete LH resistance 238320
POR Antley-Bixler syndrome with genital anomalies and disordered steroidogenesis 201750
SAMD9 MIRAGE syndrome 617053
SGPL1 Nephrotic syndrome type 14 617575
SRD5A2 46,XY disorder of sex development due to 5-alpha-reductase 2 deficiency 264600
STAR Lipoid adrenal hyperplasia 201710

*Due to the presence of pseudogenes with very high sequence similarity, mapping of reads over this gene is suboptimal. If a diagnosis of Congenital Adrenal Hyperplasia due to 21-hydroxylase deficiency (CAH) is suspected please request additional testing (Sanger sequencing and copy number analysis by MLPA).

 

Eligibility

Eligibility criteria for genomic tests can be found in the National Genomic Test Directory.

This lists the clinical specialties that would be expected to request for a given clinical indication and sets out which patients should be considered for testing.

Test order form

All samples for genomic testing should be accompanied by a fully completed request form.

The request form should include as much clinical information about the patient or family member, family relationships and the requested test code (R number). All request forms must indicate either a specific disorder/gene(s) to be investigated or, a request to extract and store DNA.

This form should be used for the majority of test requests.

Please do not download and store this on your desktop or system. The form is regularly updated. Our recommendation is to save or bookmark a link to our website to ensure you are working with the most up-do-date version.

Download the latest version here: GMS Test Order Form v2.3

Consent

An appropriate discussion of genomic testing and the possible implications for a patient and their family members must take place before testing is requested.

It is the referring clinician’s responsibility to ensure that the patient/carer knows the purpose of the test and that the sample may be stored for future diagnostic testing. In submitting a sample with a request form, the clinician confirms that informed consent has been obtained for (a) testing and storage (indefinitely) (b) the use of this sample and the information generated from it to be shared with members of the donor’s family and their health professionals (if appropriate). The patient should be advised that the samples may be used anonymously for quality assurance and training purposes.

If stated as a requirement for a specific test, a record of this discussion must be retained within the patient record when a genomic test is ordered.

For more information please view the Consent and Confidentiality in Genomic Medicine guidelines from the Joint Committee on Medical Genetics.

Samples and transport

Before sending samples for genomic testing, please ensure you follow the correct preparation and transport guidelines. This includes information on sample types, volumes, handling, labelling, and packaging standards.

For a full list of sample requirements and transport guidance, please visit the samples and transport page of the website. 

Results and turnaround times

Turnaround times (TATs) for genomic tests are continually refined through ongoing reviews of testing standards.

Results will be returned to the email account or clinician listed on the request form.

Visit the results and turnaround page for more information.

The laboratory participates in the European Molecular Genetics Quality Network (EMQN) sequencing scheme.